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iCOBRA

This is the development version of iCOBRA; for the stable release version, see iCOBRA.

Comparison and Visualization of Ranking and Assignment Methods

Bioconductor version: Development (3.18)

This package provides functions for calculation and visualization of performance metrics for evaluation of ranking and binary classification (assignment) methods. Various types of performance plots can be generated programmatically. The package also contains a shiny application for interactive exploration of results.

Author: Charlotte Soneson [aut, cre]

Maintainer: Charlotte Soneson <charlottesoneson at gmail.com>

Citation (from within R, enter citation("iCOBRA")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("iCOBRA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("iCOBRA")
iCOBRA User Guide HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Classification, Software, Visualization
Version 1.29.1
In Bioconductor since BioC 3.3 (R-3.3) (7.5 years)
License GPL (>=2)
Depends R (>= 4.0)
Imports shiny (>= 0.9.1.9008), shinydashboard, shinyBS, reshape2, ggplot2 (>= 2.0.0), scales, ROCR, dplyr, DT, limma, methods, UpSetR, markdown, utils
Linking To
Suggests knitr, rmarkdown, testthat
System Requirements
Enhances
URL https://github.com/csoneson/iCOBRA
Bug Reports https://github.com/csoneson/iCOBRA/issues
See More
Depends On Me
Imports Me
Suggests Me muscat, SummarizedBenchmark
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package iCOBRA_1.29.1.tar.gz
Windows Binary iCOBRA_1.29.1.zip (64-bit only)
macOS Binary (x86_64) iCOBRA_1.29.1.tgz
macOS Binary (arm64) iCOBRA_1.29.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/iCOBRA
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/iCOBRA
Bioc Package Browser https://code.bioconductor.org/browse/iCOBRA/
Package Short Url https://bioconductor.org/packages/iCOBRA/
Package Downloads Report Download Stats