ibh
This is the development version of ibh; for the stable release version, see ibh.
Interaction Based Homogeneity for Evaluating Gene Lists
Bioconductor version: Development (3.18)
This package contains methods for calculating Interaction Based Homogeneity to evaluate fitness of gene lists to an interaction network which is useful for evaluation of clustering results and gene list analysis. BioGRID interactions are used in the calculation. The user can also provide their own interactions.
Author: Kircicegi Korkmaz, Volkan Atalay, Rengul Cetin Atalay.
Maintainer: Kircicegi Korkmaz <e102771 at ceng.metu.edu.tr>
citation("ibh")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("ibh")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ibh")| ibh | R Script | |
| Reference Manual |
Details
| biocViews | DataImport, GraphAndNetwork, NetworkEnrichment, QualityControl, Software |
| Version | 1.49.0 |
| In Bioconductor since | BioC 2.8 (R-2.13) (12.5 years) |
| License | GPL (>= 2) |
| Depends | simpIntLists |
| Imports | |
| Linking To | |
| Suggests | yeastCC, stats |
| System Requirements | |
| Enhances | |
| URL |
See More
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ibh_1.49.0.tar.gz |
| Windows Binary | ibh_1.49.0.zip |
| macOS Binary (x86_64) | ibh_1.49.0.tgz |
| macOS Binary (arm64) | ibh_1.49.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ibh |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ibh |
| Bioc Package Browser | https://code.bioconductor.org/browse/ibh/ |
| Package Short Url | https://bioconductor.org/packages/ibh/ |
| Package Downloads Report | Download Stats |