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illuminaio

This is the development version of illuminaio; for the stable release version, see illuminaio.

Parsing Illumina Microarray Output Files

Bioconductor version: Development (3.18)

Tools for parsing Illumina's microarray output files, including IDAT.

Author: Keith Baggerly [aut], Henrik Bengtsson [aut], Kasper Daniel Hansen [aut, cre], Matt Ritchie [aut], Mike L. Smith [aut], Tim Triche Jr. [ctb]

Maintainer: Kasper Daniel Hansen <kasperdanielhansen at gmail.com>

Citation (from within R, enter citation("illuminaio")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("illuminaio")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("illuminaio")
Description of Encrypted IDAT Format PDF
Introduction to illuminaio PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews DataImport, Infrastructure, Microarray, ProprietaryPlatforms, Software
Version 0.43.0
In Bioconductor since BioC 2.12 (R-3.0) (10.5 years)
License GPL-2
Depends
Imports base64
Linking To
Suggests RUnit, BiocGenerics, IlluminaDataTestFiles(>= 1.0.2), BiocStyle
System Requirements
Enhances
URL https://github.com/HenrikBengtsson/illuminaio
Bug Reports https://github.com/HenrikBengtsson/illuminaio/issues
See More
Depends On Me EGSEA123, normalize450K, RnBeads, wateRmelon
Imports Me beadarray, bigmelon, ChAMP, crlmm, ENmix, methylumi, minfi, sesame
Suggests Me limma
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package illuminaio_0.43.0.tar.gz
Windows Binary illuminaio_0.43.0.zip
macOS Binary (x86_64) illuminaio_0.43.0.tgz
macOS Binary (arm64) illuminaio_0.43.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/illuminaio
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/illuminaio
Bioc Package Browser https://code.bioconductor.org/browse/illuminaio/
Package Short Url https://bioconductor.org/packages/illuminaio/
Package Downloads Report Download Stats