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interacCircos

This is the development version of interacCircos; for the stable release version, see interacCircos.

The Generation of Interactive Circos Plot

Bioconductor version: Development (3.18)

Implement in an efficient approach to display the genomic data, relationship, information in an interactive circular genome(Circos) plot. 'interacCircos' are inspired by 'circosJS', 'BioCircos.js' and 'NG-Circos' and we integrate the modules of 'circosJS', 'BioCircos.js' and 'NG-Circos' into this R package, based on 'htmlwidgets' framework.

Author: Zhe Cui [aut, cre]

Maintainer: Zhe Cui <mrcuizhe at gmail.com>

Citation (from within R, enter citation("interacCircos")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("interacCircos")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("interacCircos")
interacCircos HTML R Script
Reference Manual PDF

Details

biocViews Software, Visualization
Version 1.11.0
In Bioconductor since BioC 3.13 (R-4.1) (2 years)
License GPL-3
Depends R (>= 4.1)
Imports RColorBrewer, htmlwidgets, plyr, methods
Linking To
Suggests knitr, rmarkdown
System Requirements
Enhances
URL
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package interacCircos_1.11.0.tar.gz
Windows Binary interacCircos_1.11.0.zip
macOS Binary (x86_64) interacCircos_1.11.0.tgz
macOS Binary (arm64) interacCircos_1.11.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/interacCircos
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/interacCircos
Bioc Package Browser https://code.bioconductor.org/browse/interacCircos/
Package Short Url https://bioconductor.org/packages/interacCircos/
Package Downloads Report Download Stats