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matchBox

This is the development version of matchBox; for the stable release version, see matchBox.

Utilities to compute, compare, and plot the agreement between ordered vectors of features (ie. distinct genomic experiments). The package includes Correspondence-At-the-TOP (CAT) analysis.

Bioconductor version: Development (3.18)

The matchBox package enables comparing ranked vectors of features, merging multiple datasets, removing redundant features, using CAT-plots and Venn diagrams, and computing statistical significance.

Author: Luigi Marchionni <marchion at jhu.edu>, Anuj Gupta <agupta52 at jhu.edu>

Maintainer: Luigi Marchionni <marchion at jhu.edu>, Anuj Gupta <agupta52 at jhu.edu>

Citation (from within R, enter citation("matchBox")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("matchBox")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("matchBox")
Working with the matchBox package PDF R Script
Reference Manual PDF

Details

biocViews Annotation, Microarray, MultipleComparison, Software, Visualization
Version 1.43.0
In Bioconductor since BioC 2.11 (R-2.15) (11 years)
License Artistic-2.0
Depends R (>= 2.8.0)
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package matchBox_1.43.0.tar.gz
Windows Binary matchBox_1.43.0.zip
macOS Binary (x86_64) matchBox_1.43.0.tgz
macOS Binary (arm64) matchBox_1.43.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/matchBox
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/matchBox
Bioc Package Browser https://code.bioconductor.org/browse/matchBox/
Package Short Url https://bioconductor.org/packages/matchBox/
Package Downloads Report Download Stats