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meshr

This is the development version of meshr; for the stable release version, see meshr.

Tools for conducting enrichment analysis of MeSH

Bioconductor version: Development (3.18)

A set of annotation maps describing the entire MeSH assembled using data from MeSH.

Author: Koki Tsuyuzaki, Itoshi Nikaido, Gota Morota

Maintainer: Koki Tsuyuzaki <k.t.the-answer at hotmail.co.jp>

Citation (from within R, enter citation("meshr")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("meshr")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("meshr")
AnnotationHub-style MeSH ORA Framework from BioC 3.14 HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Annotation, AnnotationData, Bioinformatics, FunctionalAnnotation, MeSHDb, MultipleComparisons, Software, Statistics
Version 2.7.0
In Bioconductor since BioC 2.14 (R-3.1) (9.5 years)
License Artistic-2.0
Depends R (>= 4.1.0)
Imports markdown, rmarkdown, BiocStyle, knitr, methods, stats, utils, fdrtool, MeSHDbi, Category, S4Vectors, BiocGenerics, RSQLite
Linking To
Suggests
System Requirements
Enhances
URL
Bug Reports https://github.com/rikenbit/meshr/issues
See More
Depends On Me
Imports Me scTensor
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package meshr_2.7.0.tar.gz
Windows Binary meshr_2.7.0.zip
macOS Binary (x86_64) meshr_2.7.0.tgz
macOS Binary (arm64) meshr_2.7.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/meshr
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/meshr
Bioc Package Browser https://code.bioconductor.org/browse/meshr/
Package Short Url https://bioconductor.org/packages/meshr/
Package Downloads Report Download Stats