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methInheritSim

This is the development version of methInheritSim; for the stable release version, see methInheritSim.

Simulating Whole-Genome Inherited Bisulphite Sequencing Data

Bioconductor version: Development (3.18)

Simulate a multigeneration methylation case versus control experiment with inheritance relation using a real control dataset.

Author: Pascal Belleau, Astrid Deschênes and Arnaud Droit

Maintainer: Pascal Belleau <pascal_belleau at hotmail.com>

Citation (from within R, enter citation("methInheritSim")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("methInheritSim")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("methInheritSim")
Simulating Whole-Genome Inherited Bisulphite Sequencing Data HTML R Script
Reference Manual PDF
README Text
NEWS Text

Details

biocViews BiologicalQuestion, DNAMethylation, DifferentialMethylation, Epigenetics, ImmunoOncology, MethylSeq, Sequencing, Software, StatisticalMethod, WholeGenome
Version 1.23.0
In Bioconductor since BioC 3.6 (R-3.4) (6 years)
License Artistic-2.0
Depends R (>= 3.5.0)
Imports methylKit, GenomicRanges, GenomeInfoDb, parallel, BiocGenerics, S4Vectors, methods, stats, IRanges, msm
Linking To
Suggests BiocStyle, knitr, rmarkdown, RUnit, methylInheritance
System Requirements
Enhances
URL https://github.com/belleau/methInheritSim
Bug Reports https://github.com/belleau/methInheritSim/issues
See More
Depends On Me
Imports Me
Suggests Me methylInheritance
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package methInheritSim_1.23.0.tar.gz
Windows Binary methInheritSim_1.23.0.zip
macOS Binary (x86_64) methInheritSim_1.23.0.tgz
macOS Binary (arm64) methInheritSim_1.23.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/methInheritSim
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/methInheritSim
Bioc Package Browser https://code.bioconductor.org/browse/methInheritSim/
Package Short Url https://bioconductor.org/packages/methInheritSim/
Package Downloads Report Download Stats