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miRBaseConverter

This is the development version of miRBaseConverter; for the stable release version, see miRBaseConverter.

A comprehensive and high-efficiency tool for converting and retrieving the information of miRNAs in different miRBase versions

Bioconductor version: Development (3.18)

A comprehensive tool for converting and retrieving the miRNA Name, Accession, Sequence, Version, History and Family information in different miRBase versions. It can process a huge number of miRNAs in a short time without other depends.

Author: Taosheng Xu<taosheng.x at gmail.com>, Thuc Le<Thuc.Le at unisa.edu.au>

Maintainer: Taosheng Xu<taosheng.x at gmail.com>

Citation (from within R, enter citation("miRBaseConverter")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("miRBaseConverter")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews Software, miRNA
Version 1.25.0
In Bioconductor since BioC 3.6 (R-3.4) (6 years)
License GPL (>= 2)
Depends R (>= 3.4)
Imports stats
Linking To
Suggests BiocGenerics, RUnit, knitr, rtracklayer, utils, rmarkdown
System Requirements
Enhances
URL https://github.com/taoshengxu/miRBaseConverter
Bug Reports https://github.com/taoshengxu/miRBaseConverter/issues
See More
Depends On Me
Imports Me ExpHunterSuite, SPONGE
Suggests Me EpiMix
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary miRBaseConverter_1.25.0.zip
macOS Binary (x86_64) miRBaseConverter_1.25.0.tgz
macOS Binary (arm64) miRBaseConverter_1.25.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/miRBaseConverter
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/miRBaseConverter
Bioc Package Browser https://code.bioconductor.org/browse/miRBaseConverter/
Package Short Url https://bioconductor.org/packages/miRBaseConverter/
Package Downloads Report Download Stats