microbiome

This is the development version of microbiome; for the stable release version, see microbiome.

Microbiome Analytics

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("microbiome")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("microbiome")

microbiome R package	HTML	R Script
Reference Manual	PDF
NEWS	Text
LICENSE	Text

Details

biocViews	Metagenomics, Microbiome, Sequencing, Software, SystemsBiology
Version	1.23.0
In Bioconductor since	BioC 3.6 (R-3.4) (6 years)
License	BSD_2_clause + file LICENSE
Depends	R (>= 3.6.0), phyloseq, ggplot2
Imports	Biostrings, compositions, dplyr, reshape2, Rtsne, scales, stats, tibble, tidyr, utils, vegan
Linking To
Suggests	BiocGenerics, BiocStyle, Cairo, knitr, rmarkdown, testthat
System Requirements
Enhances
URL	http://microbiome.github.io/microbiome
Bug Reports	https://github.com/microbiome/microbiome/issues

See More

Depends On Me
Imports Me
Suggests Me	ANCOMBC
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	microbiome_1.23.0.tar.gz
Windows Binary	microbiome_1.23.0.zip
macOS Binary (x86_64)	microbiome_1.23.0.tgz
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/microbiome
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/microbiome
Bioc Package Browser	https://code.bioconductor.org/browse/microbiome/
Package Short Url	https://bioconductor.org/packages/microbiome/
Package Downloads Report	Download Stats