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msmsEDA

This is the development version of msmsEDA; for the stable release version, see msmsEDA.

Exploratory Data Analysis of LC-MS/MS data by spectral counts

Bioconductor version: Development (3.18)

Exploratory data analysis to assess the quality of a set of LC-MS/MS experiments, and visualize de influence of the involved factors.

Author: Josep Gregori, Alex Sanchez, and Josep Villanueva

Maintainer: Josep Gregori <josep.gregori at gmail.com>

Citation (from within R, enter citation("msmsEDA")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("msmsEDA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("msmsEDA")
msmsEDA: Batch effects detection in LC-MSMS experiments PDF R Script
Reference Manual PDF

Details

biocViews ImmunoOncology, MassSpectrometry, Proteomics, Software
Version 1.39.0
In Bioconductor since BioC 2.13 (R-3.0) (10 years)
License GPL-2
Depends R (>= 3.0.1), MSnbase
Imports MASS, gplots, RColorBrewer
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Depends On Me msmsTests
Imports Me
Suggests Me Harman, RforProteomics
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package msmsEDA_1.39.0.tar.gz
Windows Binary msmsEDA_1.39.0.zip
macOS Binary (x86_64) msmsEDA_1.39.0.tgz
macOS Binary (arm64) msmsEDA_1.39.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/msmsEDA
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/msmsEDA
Bioc Package Browser https://code.bioconductor.org/browse/msmsEDA/
Package Short Url https://bioconductor.org/packages/msmsEDA/
Package Downloads Report Download Stats