muscle

This is the development version of muscle; for the stable release version, see muscle.

Multiple Sequence Alignment with MUSCLE

Bioconductor version: Development (3.18)

MUSCLE performs multiple sequence alignments of nucleotide or amino acid sequences.

Author: Algorithm by Robert C. Edgar. R port by Alex T. Kalinka.

Maintainer: Alex T. Kalinka <alex.t.kalinka at gmail.com>

Citation (from within R, enter citation("muscle")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("muscle")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("muscle")

A guide to using muscle	PDF	R Script
Reference Manual	PDF
NEWS	Text

Details

biocViews	Alignment, DataImport, Genetics, MultipleSequenceAlignment, SequenceMatching, Sequencing, Software
Version	3.43.0
In Bioconductor since	BioC 3.1 (R-3.2) (8.5 years)
License	Unlimited
Depends	Biostrings
Imports
Linking To
Suggests
System Requirements
Enhances
URL	http://www.drive5.com/muscle/

Depends On Me
Imports Me	ptm
Suggests Me	geneHapR, seqmagick
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	muscle_3.43.0.tar.gz
Windows Binary	muscle_3.43.0.zip
macOS Binary (x86_64)	muscle_3.43.0.tgz
macOS Binary (arm64)	muscle_3.43.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/muscle
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/muscle
Bioc Package Browser	https://code.bioconductor.org/browse/muscle/
Package Short Url	https://bioconductor.org/packages/muscle/
Package Downloads Report	Download Stats