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myvariant

This is the development version of myvariant; for the stable release version, see myvariant.

Accesses MyVariant.info variant query and annotation services

Bioconductor version: Development (3.18)

MyVariant.info is a comprehensive aggregation of variant annotation resources. myvariant is a wrapper for querying MyVariant.info services

Author: Adam Mark

Maintainer: Adam Mark, Chunlei Wu <cwu at scripps.edu>

Citation (from within R, enter citation("myvariant")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("myvariant")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("myvariant")
Using MyVariant.R PDF R Script
Reference Manual PDF

Details

biocViews Annotation, GenomicVariation, Software, VariantAnnotation
Version 1.31.0
In Bioconductor since BioC 3.2 (R-3.2) (8 years)
License Artistic-2.0
Depends R (>= 3.2.1), VariantAnnotation
Imports httr, jsonlite, S4Vectors, Hmisc, plyr, magrittr, GenomeInfoDb
Linking To
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package myvariant_1.31.0.tar.gz
Windows Binary myvariant_1.31.0.zip (64-bit only)
macOS Binary (x86_64) myvariant_1.31.0.tgz
macOS Binary (arm64) myvariant_1.31.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/myvariant
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/myvariant
Bioc Package Browser https://code.bioconductor.org/browse/myvariant/
Package Short Url https://bioconductor.org/packages/myvariant/
Package Downloads Report Download Stats