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netprioR

This is the development version of netprioR; for the stable release version, see netprioR.

A model for network-based prioritisation of genes

Bioconductor version: Development (3.18)

A model for semi-supervised prioritisation of genes integrating network data, phenotypes and additional prior knowledge about TP and TN gene labels from the literature or experts.

Author: Fabian Schmich

Maintainer: Fabian Schmich <fabian.schmich at bsse.ethz.ch>

Citation (from within R, enter citation("netprioR")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("netprioR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("netprioR")
netprioR Vignette HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews CellBasedAssays, ImmunoOncology, Network, Preprocessing, Software
Version 1.27.0
In Bioconductor since BioC 3.4 (R-3.3) (7 years)
License GPL-3
Depends methods, graphics, R (>= 3.3)
Imports stats, Matrix, dplyr, doParallel, foreach, parallel, sparseMVN, ggplot2, gridExtra, pROC
Linking To
Suggests knitr, BiocStyle, pander
System Requirements
Enhances
URL http://bioconductor.org/packages/netprioR
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package netprioR_1.27.0.tar.gz
Windows Binary netprioR_1.27.0.zip
macOS Binary (x86_64) netprioR_1.27.0.tgz
macOS Binary (arm64) netprioR_1.27.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/netprioR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/netprioR
Bioc Package Browser https://code.bioconductor.org/browse/netprioR/
Package Short Url https://bioconductor.org/packages/netprioR/
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