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oppti

This is the development version of oppti; for the stable release version, see oppti.

Outlier Protein and Phosphosite Target Identifier

Bioconductor version: Development (3.18)

The aim of oppti is to analyze protein (and phosphosite) expressions to find outlying markers for each sample in the given cohort(s) for the discovery of personalized actionable targets.

Author: Abdulkadir Elmas

Maintainer: Abdulkadir Elmas <abdulkadir.elmas at mssm.edu>

Citation (from within R, enter citation("oppti")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("oppti")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("oppti")
Outlier Protein and Phosphosite Target Identifier HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews BiomedicalInformatics, DifferentialExpression, GeneExpression, GeneTarget, Network, Proteomics, Regression, Software
Version 1.15.0
In Bioconductor since BioC 3.10 (R-3.6) (4 years)
License MIT
Depends R (>= 3.5)
Imports limma, stats, reshape, ggplot2, grDevices, RColorBrewer, pheatmap, knitr, methods, devtools, parallelDist
Linking To
Suggests markdown
System Requirements
Enhances
URL https://github.com/Huang-lab/oppti
Bug Reports https://github.com/Huang-lab/oppti/issues
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package oppti_1.15.0.tar.gz
Windows Binary oppti_1.15.0.zip
macOS Binary (x86_64) oppti_1.15.0.tgz
macOS Binary (arm64) oppti_1.15.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/oppti
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/oppti
Bioc Package Browser https://code.bioconductor.org/browse/oppti/
Package Short Url https://bioconductor.org/packages/oppti/
Package Downloads Report Download Stats