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optimalFlow

This is the development version of optimalFlow; for the stable release version, see optimalFlow.

optimalFlow

Bioconductor version: Development (3.18)

Optimal-transport techniques applied to supervised flow cytometry gating.

Author: Hristo Inouzhe <hristo.inouzhe at gmail.com>

Maintainer: Hristo Inouzhe <hristo.inouzhe at gmail.com>

Citation (from within R, enter citation("optimalFlow")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("optimalFlow")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("optimalFlow")
optimalFlow: optimal-transport approach to Flow Cytometry analysis HTML R Script
Reference Manual PDF

Details

biocViews FlowCytometry, Software, Technology
Version 1.13.0
In Bioconductor since BioC 3.11 (R-4.0) (3.5 years)
License Artistic-2.0
Depends dplyr, optimalFlowData, rlang (>= 0.4.0)
Imports transport, parallel, Rfast, robustbase, dbscan, randomForest, foreach, graphics, doParallel, stats, flowMeans, rgl, ellipse
Linking To
Suggests knitr, BiocStyle, rmarkdown, magick
System Requirements
Enhances
URL
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Depends On Me
Imports Me
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Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package optimalFlow_1.13.0.tar.gz
Windows Binary optimalFlow_1.13.0.zip (64-bit only)
macOS Binary (x86_64) optimalFlow_1.13.0.tgz
macOS Binary (arm64) optimalFlow_1.13.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/optimalFlow
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/optimalFlow
Bioc Package Browser https://code.bioconductor.org/browse/optimalFlow/
Package Short Url https://bioconductor.org/packages/optimalFlow/
Package Downloads Report Download Stats