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planet

This is the development version of planet; for the stable release version, see planet.

Placental DNA methylation analysis tools

Bioconductor version: Development (3.18)

This package contains R functions to infer additional biological variables to supplemental DNA methylation analysis of placental data. This includes inferring ethnicity/ancestry, gestational age, and cell composition from placental DNA methylation array (450k/850k) data. The package comes with an example processed placental dataset.

Author: Victor Yuan [aut, cre], Wendy P. Robinson [ctb]

Maintainer: Victor Yuan <victor.2wy at gmail.com>

Citation (from within R, enter citation("planet")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("planet")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("planet")
planet HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews CpGIsland, DNAMethylation, DifferentialMethylation, Epigenetics, MethylationArray, Microarray, Software
Version 1.9.0
In Bioconductor since BioC 3.13 (R-4.1) (2 years)
License GPL-2
Depends R (>= 4.0)
Imports methods, tibble, magrittr, dplyr
Linking To
Suggests ggplot2, testthat, tidyr, scales, minfi, EpiDISH, knitr, rmarkdown
System Requirements
Enhances
URL https://victor.rbind.io/planet http://github.com/wvictor14/planet
Bug Reports http://github.com/wvictor14/planet/issues
See More
Depends On Me
Imports Me methylclock
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package planet_1.9.0.tar.gz
Windows Binary planet_1.9.0.zip
macOS Binary (x86_64) planet_1.9.0.tgz
macOS Binary (arm64) planet_1.9.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/planet
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/planet
Bioc Package Browser https://code.bioconductor.org/browse/planet/
Package Short Url https://bioconductor.org/packages/planet/
Package Downloads Report Download Stats