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pmm

This is the development version of pmm; for the stable release version, see pmm.

Parallel Mixed Model

Bioconductor version: Development (3.18)

The Parallel Mixed Model (PMM) approach is suitable for hit selection and cross-comparison of RNAi screens generated in experiments that are performed in parallel under several conditions. For example, we could think of the measurements or readouts from cells under RNAi knock-down, which are infected with several pathogens or which are grown from different cell lines.

Author: Anna Drewek

Maintainer: Anna Drewek <adrewek at stat.math.ethz.ch>

Citation (from within R, enter citation("pmm")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("pmm")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("pmm")
User manual for R-Package PMM PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews Regression, Software, SystemsBiology
Version 1.33.0
In Bioconductor since BioC 3.1 (R-3.2) (8.5 years)
License GPL-3
Depends R (>= 2.10)
Imports lme4, splines
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package pmm_1.33.0.tar.gz
Windows Binary pmm_1.33.0.zip
macOS Binary (x86_64) pmm_1.33.0.tgz
macOS Binary (arm64) pmm_1.33.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/pmm
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/pmm
Bioc Package Browser https://code.bioconductor.org/browse/pmm/
Package Short Url https://bioconductor.org/packages/pmm/
Package Downloads Report Download Stats