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powerTCR

This is the development version of powerTCR; for the stable release version, see powerTCR.

Model-Based Comparative Analysis of the TCR Repertoire

Bioconductor version: Development (3.18)

This package provides a model for the clone size distribution of the TCR repertoire. Further, it permits comparative analysis of TCR repertoire libraries based on theoretical model fits.

Author: Hillary Koch

Maintainer: Hillary Koch <hillary.koch01 at gmail.com>

Citation (from within R, enter citation("powerTCR")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("powerTCR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("powerTCR")
Vignette Title HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews BiomedicalInformatics, Clustering, Software
Version 1.21.0
In Bioconductor since BioC 3.7 (R-3.5) (5.5 years)
License Artistic-2.0
Depends
Imports cubature, doParallel, evmix, foreach, magrittr, methods, parallel, purrr, stats, truncdist, vegan, VGAM
Linking To
Suggests BiocStyle, knitr, rmarkdown, RUnit, BiocGenerics
System Requirements
Enhances
URL
See More
Depends On Me
Imports Me scRepertoire
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package powerTCR_1.21.0.tar.gz
Windows Binary powerTCR_1.21.0.zip
macOS Binary (x86_64) powerTCR_1.21.0.tgz
macOS Binary (arm64) powerTCR_1.21.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/powerTCR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/powerTCR
Bioc Package Browser https://code.bioconductor.org/browse/powerTCR/
Package Short Url https://bioconductor.org/packages/powerTCR/
Package Downloads Report Download Stats