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pwrEWAS

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This is the development version of pwrEWAS; for the stable release version, see pwrEWAS.

A user-friendly tool for comprehensive power estimation for epigenome wide association studies (EWAS)

Bioconductor version: Development (3.18)

pwrEWAS is a user-friendly tool to assists researchers in the design and planning of EWAS to help circumvent under- and overpowered studies.

Author: Stefan Graw

Maintainer: Stefan Graw <shgraw at uams.edu>

Citation (from within R, enter citation("pwrEWAS")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("pwrEWAS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews DNAMethylation, DifferentialMethylation, Microarray, Software, TissueMicroarray
Version 1.15.1
In Bioconductor since BioC 3.10 (R-3.6) (4 years)
License Artistic-2.0
Depends shinyBS, foreach
Imports doParallel, abind, truncnorm, CpGassoc, shiny, ggplot2, parallel, shinyWidgets, BiocManager, doSNOW, limma, genefilter, stats, grDevices, methods, utils, graphics, pwrEWAS.data
Linking To
Suggests knitr, RUnit, BiocGenerics, rmarkdown
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/pwrEWAS
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/pwrEWAS
Package Short Url https://bioconductor.org/packages/pwrEWAS/
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