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rBiopaxParser

This is the development version of rBiopaxParser; for the stable release version, see rBiopaxParser.

Parses BioPax files and represents them in R

Bioconductor version: Development (3.18)

Parses BioPAX files and represents them in R, at the moment BioPAX level 2 and level 3 are supported.

Author: Frank Kramer

Maintainer: Frank Kramer <frank.kramer at informatik.uni-augsburg.de>

Citation (from within R, enter citation("rBiopaxParser")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("rBiopaxParser")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rBiopaxParser")
rBiopaxParser Vignette PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews DataRepresentation, Software
Version 2.41.0
In Bioconductor since BioC 2.12 (R-3.0) (10.5 years)
License GPL (>= 2)
Depends R (>= 4.0), data.table
Imports XML
Linking To
Suggests Rgraphviz, RCurl, graph, RUnit, BiocGenerics, RBGL, igraph
System Requirements
Enhances
URL https://github.com/frankkramer-lab/rBiopaxParser
See More
Depends On Me
Imports Me pwOmics
Suggests Me AnnotationHub, NetPathMiner
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package rBiopaxParser_2.41.0.tar.gz
Windows Binary rBiopaxParser_2.41.0.zip
macOS Binary (x86_64) rBiopaxParser_2.41.0.tgz
macOS Binary (arm64) rBiopaxParser_2.41.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/rBiopaxParser
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/rBiopaxParser
Bioc Package Browser https://code.bioconductor.org/browse/rBiopaxParser/
Package Short Url https://bioconductor.org/packages/rBiopaxParser/
Package Downloads Report Download Stats