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rDGIdb

This is the development version of rDGIdb; for the stable release version, see rDGIdb.

R Wrapper for DGIdb

Bioconductor version: Development (3.18)

The rDGIdb package provides a wrapper for the Drug Gene Interaction Database (DGIdb). For simplicity, the wrapper query function and output resembles the user interface and results format provided on the DGIdb website (https://www.dgidb.org/).

Author: Thomas Thurnherr, Franziska Singer, Daniel J. Stekhoven, and Niko Beerenwinkel

Maintainer: Lars Bosshard <bosshard at nexus.ethz.ch>

Citation (from within R, enter citation("rDGIdb")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("rDGIdb")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rDGIdb")
Query DGIdb using R PDF R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews Annotation, FunctionalGenomics, Pharmacogenetics, Pharmacogenomics, ResearchField, Software, WorkflowStep
Version 1.27.0
In Bioconductor since BioC 3.4 (R-3.3) (7 years)
License MIT + file LICENSE
Depends
Imports jsonlite, httr, methods, graphics
Linking To
Suggests BiocStyle, knitr, testthat
System Requirements
Enhances
URL
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package rDGIdb_1.27.0.tar.gz
Windows Binary rDGIdb_1.27.0.zip
macOS Binary (x86_64) rDGIdb_1.27.0.tgz
macOS Binary (arm64) rDGIdb_1.27.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/rDGIdb
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/rDGIdb
Bioc Package Browser https://code.bioconductor.org/browse/rDGIdb/
Package Short Url https://bioconductor.org/packages/rDGIdb/
Package Downloads Report Download Stats