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rawrr

This is the development version of rawrr; for the stable release version, see rawrr.

Direct Access to Orbitrap Data and Beyond

Bioconductor version: Development (3.18)

This package wraps the functionality of the RawFileReader .NET assembly. Within the R environment, spectra and chromatograms are represented by S3 objects. The package provides basic functions to download and install the required third-party libraries. The package is developed, tested, and used at the Functional Genomics Center Zurich, Switzerland.

Author: Christian Panse [aut, cre] , Tobias Kockmann [aut]

Maintainer: Christian Panse <cp at fgcz.ethz.ch>

Citation (from within R, enter citation("rawrr")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("rawrr")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rawrr")
Direct Access to Orbitrap Data and Beyond HTML R Script
Reference Manual PDF
NEWS Text
INSTALL Text

Details

biocViews MassSpectrometry, Metabolomics, Proteomics, Software
Version 1.9.0
In Bioconductor since BioC 3.13 (R-4.1) (2 years)
License GPL-3
Depends R (>= 4.1)
Imports grDevices, graphics, stats, utils
Linking To
Suggests BiocStyle(>= 2.5), ExperimentHub, knitr, protViz (>= 0.7), rmarkdown, tartare(>= 1.5), testthat
System Requirements mono-runtime 4.x or higher (including System.Data library) on Linux/macOS, .Net Framework (>= 4.5.1) on Microsoft Windows.
Enhances
URL https://github.com/fgcz/rawrr/
Bug Reports https://github.com/fgcz/rawrr/issues
See More
Depends On Me
Imports Me MsBackendRawFileReader
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package rawrr_1.9.0.tar.gz
Windows Binary rawrr_1.9.0.zip
macOS Binary (x86_64) rawrr_1.9.0.tgz
macOS Binary (arm64) rawrr_1.9.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/rawrr
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/rawrr
Bioc Package Browser https://code.bioconductor.org/browse/rawrr/
Package Short Url https://bioconductor.org/packages/rawrr/
Package Downloads Report Download Stats