This site is a development preview. As such the content and styling may not be final and is subject to change before going into production. To see more information about the redesign click here.

Menu

Documentation:

R / CRAN packages and documentation

Support

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

rebook

This is the development version of rebook; for the stable release version, see rebook.

Re-using Content in Bioconductor Books

Bioconductor version: Development (3.18)

Provides utilities to re-use content across chapters of a Bioconductor book. This is mostly based on functionality developed while writing the OSCA book, but generalized for potential use in other large books with heavy compute. Also contains some functions to assist book deployment.

Author: Aaron Lun [aut, cre, cph]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Citation (from within R, enter citation("rebook")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("rebook")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rebook")
Reusing book content HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Infrastructure, ReportWriting, Software
Version 1.11.1
In Bioconductor since BioC 3.12 (R-4.0) (3 years)
License GPL-3
Depends
Imports utils, methods, knitr (>= 1.32), rmarkdown, CodeDepends, dir.expiry, filelock, BiocStyle
Linking To
Suggests testthat, igraph, XML, BiocManager, RCurl, bookdown, rappdirs, yaml, BiocParallel, OSCA.intro, OSCA.workflows
System Requirements
Enhances
URL
See More
Depends On Me csawBook, OSCA, OSCA.advanced, OSCA.basic, OSCA.intro, OSCA.multisample, OSCA.workflows
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package rebook_1.11.1.tar.gz
Windows Binary rebook_1.11.1.zip
macOS Binary (x86_64) rebook_1.11.1.tgz
macOS Binary (arm64) rebook_1.11.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/rebook
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/rebook
Bioc Package Browser https://code.bioconductor.org/browse/rebook/
Package Short Url https://bioconductor.org/packages/rebook/
Package Downloads Report Download Stats