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ribor

This is the development version of ribor; for the stable release version, see ribor.

An R Interface for Ribo Files

Bioconductor version: Development (3.18)

The ribor package provides an R Interface for .ribo files. It provides functionality to read the .ribo file, which is of HDF5 format, and performs common analyses on its contents.

Author: Michael Geng [cre, aut], Hakan Ozadam [aut], Can Cenik [aut]

Maintainer: Michael Geng <michaelgeng at utexas.edu>

Citation (from within R, enter citation("ribor")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("ribor")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ribor")
A Walkthrough of RiboR HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Infrastructure, Software
Version 1.13.0
In Bioconductor since BioC 3.11 (R-4.0) (3.5 years)
License GPL-3
Depends R (>= 3.6.0)
Imports dplyr, ggplot2, hash, methods, rhdf5, rlang, stats, S4Vectors, tidyr, tools, yaml
Linking To
Suggests testthat, knitr, rmarkdown
System Requirements
Enhances
URL
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ribor_1.13.0.tar.gz
Windows Binary ribor_1.13.0.zip
macOS Binary (x86_64) ribor_1.13.0.tgz
macOS Binary (arm64) ribor_1.13.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ribor
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ribor
Bioc Package Browser https://code.bioconductor.org/browse/ribor/
Package Short Url https://bioconductor.org/packages/ribor/
Package Downloads Report Download Stats