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rnaseqcomp

This is the development version of rnaseqcomp; for the stable release version, see rnaseqcomp.

Benchmarks for RNA-seq Quantification Pipelines

Bioconductor version: Development (3.18)

Several quantitative and visualized benchmarks for RNA-seq quantification pipelines. Two-condition quantifications for genes, transcripts, junctions or exons by each pipeline with necessary meta information should be organized into numeric matrices in order to proceed the evaluation.

Author: Mingxiang Teng and Rafael A. Irizarry

Maintainer: Mingxiang Teng <tengmx at gmail.com>

Citation (from within R, enter citation("rnaseqcomp")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("rnaseqcomp")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rnaseqcomp")
The rnaseqcomp user's guide HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews QualityControl, RNASeq, Software, Visualization
Version 1.31.0
In Bioconductor since BioC 3.2 (R-3.2) (8 years)
License GPL-3
Depends R (>= 3.2.0)
Imports RColorBrewer, methods
Linking To
Suggests BiocStyle, knitr, rmarkdown
System Requirements
Enhances
URL https://github.com/tengmx/rnaseqcomp
See More
Depends On Me
Imports Me
Suggests Me SummarizedBenchmark
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package rnaseqcomp_1.31.0.tar.gz
Windows Binary rnaseqcomp_1.31.0.zip
macOS Binary (x86_64) rnaseqcomp_1.31.0.tgz
macOS Binary (arm64) rnaseqcomp_1.31.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/rnaseqcomp
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/rnaseqcomp
Bioc Package Browser https://code.bioconductor.org/browse/rnaseqcomp/
Package Short Url https://bioconductor.org/packages/rnaseqcomp/
Package Downloads Report Download Stats