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sangerseqR

This is the development version of sangerseqR; for the stable release version, see sangerseqR.

Tools for Sanger Sequencing Data in R

Bioconductor version: Development (3.18)

This package contains several tools for analyzing Sanger Sequencing data files in R, including reading .scf and .ab1 files, making basecalls and plotting chromatograms.

Author: Jonathon T. Hill, Bradley Demarest

Maintainer: Jonathon Hill <jhill at byu.edu>

Citation (from within R, enter citation("sangerseqR")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("sangerseqR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("sangerseqR")
Using the sangerseqR package HTML R Script
Reference Manual PDF

Details

biocViews SNP, Sequencing, Software, Visualization
Version 1.37.0
In Bioconductor since BioC 2.14 (R-3.1) (9.5 years)
License GPL-2
Depends R (>= 3.5.0), Biostrings, stringr
Imports methods, shiny
Linking To
Suggests BiocStyle, knitr, RUnit, BiocGenerics
System Requirements
Enhances
URL
See More
Depends On Me sangeranalyseR
Imports Me scifer
Suggests Me CrispRVariants
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package sangerseqR_1.37.0.tar.gz
Windows Binary sangerseqR_1.37.0.zip (64-bit only)
macOS Binary (x86_64) sangerseqR_1.37.0.tgz
macOS Binary (arm64) sangerseqR_1.37.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/sangerseqR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/sangerseqR
Bioc Package Browser https://code.bioconductor.org/browse/sangerseqR/
Package Short Url https://bioconductor.org/packages/sangerseqR/
Package Downloads Report Download Stats