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seqTools

This is the development version of seqTools; for the stable release version, see seqTools.

Analysis of nucleotide, sequence and quality content on fastq files

Bioconductor version: Development (3.18)

Analyze read length, phred scores and alphabet frequency and DNA k-mers on uncompressed and compressed fastq files.

Author: Wolfgang Kaisers

Maintainer: Wolfgang Kaisers <kaisers at med.uni-duesseldorf.de>

Citation (from within R, enter citation("seqTools")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("seqTools")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("seqTools")
Introduction PDF R Script
seqTools_qual_report PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews QualityControl, Sequencing, Software
Version 1.35.0
In Bioconductor since BioC 3.0 (R-3.1) (9 years)
License Artistic-2.0
Depends methods, utils, zlibbioc
Imports
Linking To zlibbioc
Suggests RUnit, BiocGenerics
System Requirements
Enhances
URL
See More
Depends On Me
Imports Me qckitfastq
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package seqTools_1.35.0.tar.gz
Windows Binary seqTools_1.35.0.zip (64-bit only)
macOS Binary (x86_64) seqTools_1.35.0.tgz
macOS Binary (arm64) seqTools_1.35.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/seqTools
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/seqTools
Bioc Package Browser https://code.bioconductor.org/browse/seqTools/
Package Short Url https://bioconductor.org/packages/seqTools/
Package Downloads Report Download Stats