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sevenbridges

This is the development version of sevenbridges; for the stable release version, see sevenbridges.

Seven Bridges Platform API Client and Common Workflow Language Tool Builder in R

Bioconductor version: Development (3.18)

R client and utilities for Seven Bridges platform API, from Cancer Genomics Cloud to other Seven Bridges supported platforms.

Author: Phil Webster [aut, cre], Soner Koc [aut] , Nan Xiao [aut], Tengfei Yin [aut], Dusan Randjelovic [ctb], Emile Young [ctb], Velsera [cph, fnd]

Maintainer: Phil Webster <phil.webster at velsera.com>

Citation (from within R, enter citation("sevenbridges")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("sevenbridges")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("sevenbridges")
Complete Guide for Seven Bridges API R Client HTML R Script
Creating Your Docker Container and Command Line Interface (with docopt) HTML R Script
Describe and Execute CWL Tools/Workflows in R HTML R Script
Find Data on CGC via Data Browser and Datasets API HTML R Script
IDE Container: RStudio Server, Shiny Server, and More HTML R Script
Master Tutorial: Use R for Cancer Genomics Cloud HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews DataImport, Software, ThirdPartyClient
Version 1.31.0
In Bioconductor since BioC 3.3 (R-3.3) (7.5 years)
License Apache License 2.0 | file LICENSE
Depends methods, utils, stats
Imports httr, jsonlite, yaml, objectProperties, stringr, S4Vectors, docopt, curl, uuid, data.table
Linking To
Suggests knitr, rmarkdown, testthat, readr
System Requirements
Enhances
URL https://www.sevenbridges.com https://sbg.github.io/sevenbridges-r/ https://github.com/sbg/sevenbridges-r
Bug Reports https://github.com/sbg/sevenbridges-r/issues
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package sevenbridges_1.31.0.tar.gz
Windows Binary sevenbridges_1.31.0.zip
macOS Binary (x86_64) sevenbridges_1.31.0.tgz
macOS Binary (arm64) sevenbridges_1.31.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/sevenbridges
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/sevenbridges
Bioc Package Browser https://code.bioconductor.org/browse/sevenbridges/
Package Short Url https://bioconductor.org/packages/sevenbridges/
Package Downloads Report Download Stats