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tRNAscanImport

This is the development version of tRNAscanImport; for the stable release version, see tRNAscanImport.

Importing a tRNAscan-SE result file as GRanges object

Bioconductor version: Development (3.18)

The package imports the result of tRNAscan-SE as a GRanges object.

Author: Felix G.M. Ernst [aut, cre]

Maintainer: Felix G.M. Ernst <felix.gm.ernst at outlook.com>

Citation (from within R, enter citation("tRNAscanImport")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("tRNAscanImport")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("tRNAscanImport")
tRNAscanImport HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews DataImport, Preprocessing, Software, Visualization, WorkflowStep
Version 1.21.0
In Bioconductor since BioC 3.7 (R-3.5) (5.5 years)
License GPL-3 + file LICENSE
Depends R (>= 3.5), GenomicRanges, tRNA
Imports methods, stringr, BiocGenerics, Biostrings, Structstrings, S4Vectors, IRanges, XVector, GenomeInfoDb, rtracklayer, BSgenome, Rsamtools
Linking To
Suggests BiocStyle, knitr, rmarkdown, testthat, ggplot2, BSgenome.Scerevisiae.UCSC.sacCer3
System Requirements
Enhances
URL https://github.com/FelixErnst/tRNAscanImport
Bug Reports https://github.com/FelixErnst/tRNAscanImport/issues
See More
Depends On Me
Imports Me
Suggests Me Structstrings, tRNA
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package tRNAscanImport_1.21.0.tar.gz
Windows Binary tRNAscanImport_1.21.0.zip
macOS Binary (x86_64) tRNAscanImport_1.21.0.tgz
macOS Binary (arm64) tRNAscanImport_1.21.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/tRNAscanImport
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/tRNAscanImport
Bioc Package Browser https://code.bioconductor.org/browse/tRNAscanImport/
Package Short Url https://bioconductor.org/packages/tRNAscanImport/
Package Downloads Report Download Stats