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tracktables

This is the development version of tracktables; for the stable release version, see tracktables.

Build IGV tracks and HTML reports

Bioconductor version: Development (3.18)

Methods to create complex IGV genome browser sessions and dynamic IGV reports in HTML pages.

Author: Tom Carroll, Sanjay Khadayate, Anne Pajon, Ziwei Liang

Maintainer: Tom Carroll <tc.infomatics at gmail.com>

Citation (from within R, enter citation("tracktables")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("tracktables")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("tracktables")
Creating IGV HTML reports with tracktables PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews ReportWriting, Sequencing, Software
Version 1.35.0
In Bioconductor since BioC 3.0 (R-3.1) (9 years)
License GPL (>= 3)
Depends R (>= 3.5.0)
Imports IRanges, GenomicRanges, XVector, Rsamtools, XML, tractor.base, stringr, RColorBrewer, methods
Linking To
Suggests knitr, BiocStyle
System Requirements
Enhances
URL
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package tracktables_1.35.0.tar.gz
Windows Binary tracktables_1.35.0.zip
macOS Binary (x86_64) tracktables_1.35.0.tgz
macOS Binary (arm64) tracktables_1.35.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/tracktables
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/tracktables
Bioc Package Browser https://code.bioconductor.org/browse/tracktables/
Package Short Url https://bioconductor.org/packages/tracktables/
Package Downloads Report Download Stats