tripr
This is the development version of tripr; for the stable release version, see tripr.
T-cell Receptor/Immunoglobulin Profiler (TRIP)
Bioconductor version: Development (3.18)
TRIP is a software framework that provides analytics services on antigen receptor (B cell receptor immunoglobulin, BcR IG | T cell receptor, TR) gene sequence data. It is a web application written in R Shiny. It takes as input the output files of the IMGT/HighV-Quest tool. Users can select to analyze the data from each of the input samples separately, or the combined data files from all samples and visualize the results accordingly.
Author: Maria Th. Kotouza [aut], Katerina Gemenetzi [aut], Chrysi Galigalidou [aut], Elisavet Vlachonikola [aut], Nikolaos Pechlivanis [cre], Andreas Agathangelidis [aut], Raphael Sandaltzopoulos [aut], Pericles A. Mitkas [aut], Kostas Stamatopoulos [aut], Anastasia Chatzidimitriou [aut], Fotis E. Psomopoulos [aut], Iason Ofeidis [aut], Aspasia Orfanou [aut]
Maintainer: Nikolaos Pechlivanis <inab.bioinformatics at lists.certh.gr>
citation("tripr")
):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("tripr")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("tripr")
tripr User Guide | HTML | R Script |
Reference Manual | ||
NEWS | Text | |
LICENSE | Text |
Details
biocViews | BatchEffect, GeneExpression, ImmunoOncology, MultipleComparison, Software, TargetedResequencing |
Version | 1.7.0 |
In Bioconductor since | BioC 3.14 (R-4.1) (2 years) |
License | MIT + file LICENSE |
Depends | shiny (>= 1.6.0), shinyBS |
Imports | shinyjs, shinyFiles, plyr, data.table, DT, stringr, stringdist, plot3D, gridExtra, RColorBrewer, plotly, dplyr, config (>= 0.3.1), golem (>= 0.3.1), methods, grDevices, graphics, stats, utils |
Linking To | |
Suggests | BiocGenerics, shinycssloaders, tidyverse, BiocManager, Biostrings, xtable, rlist, motifStack, knitr, rmarkdown, testthat (>= 3.0.0), fs, BiocStyle, RefManageR, biocthis, pryr |
System Requirements | |
Enhances | parallel |
URL | https://github.com/BiodataAnalysisGroup/tripr |
Bug Reports | https://github.com/BiodataAnalysisGroup/tripr/issues |
See More
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | tripr_1.7.0.tar.gz |
Windows Binary | tripr_1.7.0.zip |
macOS Binary (x86_64) | tripr_1.7.0.tgz |
macOS Binary (arm64) | tripr_1.7.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/tripr |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/tripr |
Bioc Package Browser | https://code.bioconductor.org/browse/tripr/ |
Package Short Url | https://bioconductor.org/packages/tripr/ |
Package Downloads Report | Download Stats |