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vsclust

This is the development version of vsclust; for the stable release version, see vsclust.

Feature-based variance-sensitive quantitative clustering

Bioconductor version: Development (3.18)

Feature-based variance-sensitive clustering of omics data. Optimizes cluster assignment by taking into account individual feature variance. Includes several modules for statistical testing, clustering and enrichment analysis.

Author: Veit Schwaemmle [aut, cre]

Maintainer: Veit Schwaemmle <veits at bmb.sdu.dk>

Citation (from within R, enter citation("vsclust")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("vsclust")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("vsclust")
VSClust on Bioconductor object HTML R Script
VSClust workflow HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews Annotation, Clustering, DifferentialExpression, Metabolomics, PrincipalComponent, Proteomics, Software, Visualization
Version 1.3.0
In Bioconductor since BioC 3.16 (R-4.2) (1 year)
License GPL-2
Depends R (>= 4.2.0)
Imports matrixStats, limma, parallel, shiny, qvalue, grDevices, stats, MultiAssayExperiment, graphics
Linking To Rcpp
Suggests knitr, yaml, testthat (>= 3.0.0), rmarkdown, BiocStyle, clusterProfiler
System Requirements
Enhances
URL
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package vsclust_1.3.0.tar.gz
Windows Binary vsclust_1.3.0.zip
macOS Binary (x86_64) vsclust_1.3.0.tgz
macOS Binary (arm64) vsclust_1.3.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/vsclust
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/vsclust
Bioc Package Browser https://code.bioconductor.org/browse/vsclust/
Package Short Url https://bioconductor.org/packages/vsclust/
Package Downloads Report Download Stats