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vtpnet

This is the development version of vtpnet; for the stable release version, see vtpnet.

variant-transcription factor-phenotype networks

Bioconductor version: Development (3.18)

variant-transcription factor-phenotype networks, inspired by Maurano et al., Science (2012), PMID 22955828

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("vtpnet")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("vtpnet")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("vtpnet")
vtpnet: variant-transcription factor-network tools PDF R Script
Reference Manual PDF

Details

biocViews Network, Software
Version 0.41.0
In Bioconductor since BioC 2.13 (R-3.0) (10 years)
License Artistic-2.0
Depends R (>= 3.0.0), graph, GenomicRanges, gwascat, doParallel, foreach
Imports
Linking To
Suggests MotifDb, VariantAnnotation, Rgraphviz
System Requirements
Enhances
URL
See More
Depends On Me
Imports Me
Suggests Me
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Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package vtpnet_0.41.0.tar.gz
Windows Binary vtpnet_0.41.0.zip
macOS Binary (x86_64) vtpnet_0.41.0.tgz
macOS Binary (arm64) vtpnet_0.41.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/vtpnet
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/vtpnet
Bioc Package Browser https://code.bioconductor.org/browse/vtpnet/
Package Short Url https://bioconductor.org/packages/vtpnet/
Package Downloads Report Download Stats