BioMartGOGeneSets

This is the development version of BioMartGOGeneSets; to use it, please install the devel version of Bioconductor.

Gene Ontology Gene Sets from BioMart

Bioconductor version: Development (3.18)

It contains pre-compiled Gene Ontology gene sets for all organisms available on the Ensembl database. It also includes GO gene sets for organisms on Ensembl Plants, Ensembl Metazoa, Ensembl Fungi and Ensembl Protists. The data was collected with the biomaRt package.

Author: Zuguang Gu [aut, cre]

Maintainer: Zuguang Gu <z.gu at dkfz.de>

Citation (from within R, enter citation("BioMartGOGeneSets")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("BioMartGOGeneSets")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BioMartGOGeneSets")

BioMart Gene Ontology Gene Sets Collections	HTML	R Script
Pre-compiled GO Gene Sets	HTML	R Script
Retrieve GO Gene Sets from BioMart	HTML	R Script
Reference Manual	PDF
NEWS	Text
LICENSE	Text

Details

biocViews	AnnotationData, Organism
Version	0.99.10
License	MIT + file LICENSE
Depends	R (>= 4.0.0)
Imports	utils, S4Vectors, GenomicRanges
Linking To
Suggests	biomaRt, GO.db, GenomeInfoDb, knitr, testthat, GetoptLong, DT
System Requirements
Enhances
URL	https://github.com/jokergoo/BioMartGOGeneSets

Depends On Me
Imports Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	BioMartGOGeneSets_0.99.10.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Package Short Url	https://bioconductor.org/packages/BioMartGOGeneSets/
Package Downloads Report	Download Stats