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ENCODExplorerData

This is the development version of ENCODExplorerData; for the stable release version, see ENCODExplorerData.

A compilation of ENCODE metadata

Bioconductor version: Development (3.18)

This package allows user to quickly access ENCODE project files metadata and give access to helper functions to query the ENCODE rest api, download ENCODE datasets and save the database in SQLite format.

Author: Charles Joly Beauparlant [aut], Eric Fournier [aut, cre], Arnaud Droit [aut]

Maintainer: Eric Fournier <Fournier.Eric.2 at crchudequebec.ulaval.ca>

Citation (from within R, enter citation("ENCODExplorerData")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("ENCODExplorerData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ENCODExplorerData")
Introduction to ENCODExplorerData HTML
Reference Manual PDF
NEWS Text

Details

biocViews AnnotationData, AnnotationHub, CustomDBSchema, Homo_sapiens, Mus_musculus
Version 0.99.5
License Artistic-2.0
Depends R (>= 3.6)
Imports tools, jsonlite, RCurl, data.table, methods
Linking To
Suggests AnnotationHub, RUnit, BiocGenerics, knitr, curl, httr
System Requirements
Enhances
URL
Bug Reports https://github.com/ArnaudDroitLab/ENCODExplorerData/issues
See More
Depends On Me
Imports Me
Suggests Me
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ENCODExplorerData_0.99.5.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Package Short Url https://bioconductor.org/packages/ENCODExplorerData/
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