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JASPAR2020

This is the development version of JASPAR2020; for the stable release version, see JASPAR2020.

Data package for JASPAR database (version 2020)

Bioconductor version: Development (3.18)

Data package for JASPAR2020. To search this databases, please use the package TFBSTools (>= 1.23.1).

Author: Damir Baranasic <damir.baranasic at lms.mrc.ac.uk>

Maintainer: Damir Baranasic <damir.baranasic at lms.mrc.ac.uk>

Citation (from within R, enter citation("JASPAR2020")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("JASPAR2020")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("JASPAR2020")
JASPAR2020 HTML R Script
Reference Manual PDF

Details

biocViews AnnotationData, FunctionalAnnotation
Version 0.99.10
License GPL-2
Depends R (>= 3.6.0), methods
Imports
Linking To
Suggests knitr, rmarkdown, TFBSTools(>= 1.23.1)
System Requirements
Enhances
URL http://jaspar.genereg.net/
See More
Depends On Me
Imports Me
Suggests Me monaLisa, motifStack
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package JASPAR2020_0.99.10.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Package Short Url https://bioconductor.org/packages/JASPAR2020/
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