geneplast.data

This is the development version of geneplast.data; for the stable release version, see geneplast.data.

Input data for the geneplast package via AnnotationHub

Bioconductor version: Development (3.18)

The package geneplast.data provides datasets from different sources via AnnotationHub to use in geneplast pipelines. The datasets have species, phylogenetic trees, and orthology relationships among eukaryotes from different orthologs databases.

Author: Leonardo Campos [aut, cre], Danilo Imparato [aut], Rodrigo Dalmolin [aut], Mauro Castro [aut]

Maintainer: Leonardo Campos <leofields at gmail.com>

Citation (from within R, enter citation("geneplast.data")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("geneplast.data")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("geneplast.data")

Supporting data for geneplast evolutionary analyses	HTML	R Script
Reference Manual	PDF
NEWS	Text

Details

biocViews	AnnotationData, AnnotationHub, GeneRegulation, Genetics, SystemsBiology
Version	0.99.6
License	Artistic-2.0
Depends	R (>= 4.0)
Imports
Linking To
Suggests	geneplast, BiocGenerics, BiocStyle, knitr, rmarkdown
System Requirements
Enhances
URL

Depends On Me
Imports Me
Suggests Me	geneplast
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	geneplast.data_0.99.6.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Package Short Url	https://bioconductor.org/packages/geneplast.data/
Package Downloads Report	Download Stats