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phastCons100way.UCSC.hg19

This is the development version of phastCons100way.UCSC.hg19; for the stable release version, see phastCons100way.UCSC.hg19.

UCSC phastCons conservation scores for hg19

Bioconductor version: Development (3.18)

Store UCSC phastCons conservation scores for the human genome (hg19) calculated from multiple alignments with other 99 vertebrate species.

Author: Robert Castelo [aut, cre]

Maintainer: Robert Castelo <robert.castelo at upf.edu>

Citation (from within R, enter citation("phastCons100way.UCSC.hg19")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("phastCons100way.UCSC.hg19")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF
NEWS Text

Details

biocViews AnnotationData, Genetics, GenomicScores, Homo_sapiens
Version 3.7.2
License Artistic-2.0
Depends R (>= 3.0.0), GenomicScores(>= 1.3.19)
Imports utils, S4Vectors, IRanges, GenomicRanges, GenomeInfoDb, BSgenome
Linking To
Suggests
System Requirements
Enhances
URL
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Depends On Me
Imports Me RareVariantVis
Suggests Me ATACseqQC, GenomicScores, VariantFiltering
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package phastCons100way.UCSC.hg19_3.7.2.tar.gz
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Package Short Url https://bioconductor.org/packages/phastCons100way.UCSC.hg19/
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