This site is a development preview. As such the content and styling may not be final and is subject to change before going into production. To see more information about the redesign click here.

Menu

Documentation:

R / CRAN packages and documentation

Support

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

phastCons100way.UCSC.hg38

This is the development version of phastCons100way.UCSC.hg38; for the stable release version, see phastCons100way.UCSC.hg38.

UCSC phastCons conservation scores for hg38

Bioconductor version: Development (3.18)

Store UCSC phastCons conservation scores for the human genome (hg38) calculated from multiple alignments with other 99 vertebrate species.

Author: Robert Castelo [aut, cre]

Maintainer: Robert Castelo <robert.castelo at upf.edu>

Citation (from within R, enter citation("phastCons100way.UCSC.hg38")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("phastCons100way.UCSC.hg38")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF
NEWS Text

Details

biocViews AnnotationData, Genetics, GenomicScores, Homo_sapiens
Version 3.7.1
License Artistic-2.0
Depends R (>= 3.0.0), GenomicScores(>= 1.3.19)
Imports utils, S4Vectors, IRanges, GenomicRanges, GenomeInfoDb, BSgenome
Linking To
Suggests
System Requirements
Enhances
URL
See More
Depends On Me
Imports Me primirTSS
Suggests Me
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package phastCons100way.UCSC.hg38_3.7.1.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Package Short Url https://bioconductor.org/packages/phastCons100way.UCSC.hg38/
Package Downloads Report Download Stats