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BeadSorted.Saliva.EPIC

This is the development version of BeadSorted.Saliva.EPIC; for the stable release version, see BeadSorted.Saliva.EPIC.

Illumina EPIC data on BeadSorted child saliva cells

Bioconductor version: Development (3.18)

Raw data objects used to estimate saliva cell proportion estimates in ewastools. The FlowSorted.Saliva.EPIC object is constructed from samples assayed by Lauren Middleton et. al. (2021).

Author: Jonah Fisher [aut, cre], Kelly Bakulski [aut], Lauren Middleton [aut]

Maintainer: Jonah Fisher <jazzfish at umich.edu>

Citation (from within R, enter citation("BeadSorted.Saliva.EPIC")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("BeadSorted.Saliva.EPIC")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BeadSorted.Saliva.EPIC")
BeadSorted.Saliva.EPIC.html HTML R Script
Reference Manual PDF

Details

biocViews ExperimentData, ExperimentHub, Genome, Homo_sapiens_Data, MethylationArrayData, MicroarrayData
Version 1.9.0
License GPL-3
Depends R (>= 4.1), minfi(>= 1.36.0), ExperimentHub
Imports
Linking To
Suggests knitr, rmarkdown
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Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BeadSorted.Saliva.EPIC_1.9.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/BeadSorted.Saliva.EPIC
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/BeadSorted.Saliva.EPIC
Package Short Url https://bioconductor.org/packages/BeadSorted.Saliva.EPIC/
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