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CardinalWorkflows

This is the development version of CardinalWorkflows; for the stable release version, see CardinalWorkflows.

Datasets and workflows for the Cardinal mass spectrometry imaging package

Bioconductor version: Development (3.18)

Datasets and workflows for Cardinal: DESI and MALDI examples including pig fetus, cardinal painting, and human RCC.

Author: Kylie A. Bemis <k.bemis at northeastern.edu>

Maintainer: Kylie A. Bemis <k.bemis at northeastern.edu>

Citation (from within R, enter citation("CardinalWorkflows")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("CardinalWorkflows")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CardinalWorkflows")
1. Segmentation: Unsupervised analysis workflow HTML R Script
2. Classification: Supervised analysis workflow HTML R Script
3. Class comparision: Statistical testing workflow HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews ExperimentData, ImagingMassSpectrometryData, MassSpectrometryData
Version 1.33.0
License Artistic-2.0
Depends R (>= 2.10), Cardinal
Imports
Linking To
Suggests BiocStyle, knitr, rmarkdown
System Requirements
Enhances
URL
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CardinalWorkflows_1.33.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/CardinalWorkflows
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CardinalWorkflows
Package Short Url https://bioconductor.org/packages/CardinalWorkflows/
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