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ELMER.data

This is the development version of ELMER.data; for the stable release version, see ELMER.data.

Data for the ELMER package

Bioconductor version: Development (3.18)

Supporting data for the ELMER package. It includes: - elmer.data.example.promoter: mae.promoter - elmer.data.example: data - EPIC.hg38.manifest - EPIC.hg19.manifest - hm450.hg38.manifest - hm450.hg19.manifest - hocomoco.table - human.TF - LUSC_meth_refined: Meth - LUSC_RNA_refined: GeneExp - Probes.motif.hg19.450K - Probes.motif.hg19.EPIC - Probes.motif.hg38.450K - Probes.motif.hg38.EPIC - TF.family - TF.subfamily - Human_genes__GRCh37_p13 - Human_genes__GRCh38_p12 - Human_genes__GRCh37_p13__tss - Human_genes__GRCh38_p12__tss

Author: Tiago Chedraoui Silva, Lijing Yao Simon Coetzee, Benjamin P. Berman

Maintainer: Tiago Chedraoui Silva <tiagochst at gmail.com>

Citation (from within R, enter citation("ELMER.data")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("ELMER.data")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ELMER.data")
ELMER.data: Supporting data for the ELMER package HTML R Script
Reference Manual PDF

Details

biocViews AssayDomainData, ExperimentData, OrganismData, TechnologyData
Version 2.25.0
License GPL-3
Depends R (>= 3.5.0)
Imports GenomicRanges
Linking To
Suggests BiocStyle, knitr, dplyr, devtools, DT, rmarkdown
System Requirements
Enhances
URL
See More
Depends On Me ELMER
Imports Me EpiMix
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ELMER.data_2.25.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/ELMER.data
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ELMER.data
Package Short Url https://bioconductor.org/packages/ELMER.data/
Package Downloads Report Download Stats