GeuvadisTranscriptExpr
This is the development version of GeuvadisTranscriptExpr; for the stable release version, see GeuvadisTranscriptExpr.
Data package with transcript expression and bi-allelic genotypes from the GEUVADIS project
Bioconductor version: Development (3.18)
Provides transcript expression and bi-allelic genotypes corresponding to the chromosome 19 for CEU individuals from the GEUVADIS project, Lappalainen et al.
Author: Malgorzata Nowicka [aut, cre]
Maintainer: Malgorzata Nowicka <gosia.nowicka at uzh.ch>
citation("GeuvadisTranscriptExpr")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("GeuvadisTranscriptExpr")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GeuvadisTranscriptExpr")| Preprocessing and preparation of transcript expression and genotypes from the GEUVADIS project for sQTL analysis | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | ExperimentData, ExpressionData, Genome, Homo_sapiens_Data, RNASeqData, SNPData, SequencingData |
| Version | 1.29.0 |
| License | GPL (>= 3) |
| Depends | R (>= 3.5.0) |
| Imports | |
| Linking To | |
| Suggests | limma, rtracklayer, GenomicRanges, Rsamtools, VariantAnnotation, tools, BiocStyle, knitr, testthat |
| System Requirements | |
| Enhances | |
| URL |
See More
| Depends On Me | |
| Imports Me | |
| Suggests Me | DRIMSeq |
| Links To Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | GeuvadisTranscriptExpr_1.29.0.tar.gz |
| Windows Binary | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/GeuvadisTranscriptExpr |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GeuvadisTranscriptExpr |
| Package Short Url | https://bioconductor.org/packages/GeuvadisTranscriptExpr/ |
| Package Downloads Report | Download Stats |