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HiCDataHumanIMR90

This is the development version of HiCDataHumanIMR90; for the stable release version, see HiCDataHumanIMR90.

Human IMR90 Fibroblast HiC data from Dixon et al. 2012

Bioconductor version: Development (3.18)

The HiC data from Human Fibroblast IMR90 cell line (HindIII restriction) was retrieved from the GEO website, accession number GSE35156 (http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE35156). The raw reads were processed as explained in Dixon et al. (Nature 2012).

Author: Nicolas Servant

Maintainer: Nicolas Servant <Nicolas.Servant at curie.fr>

Citation (from within R, enter citation("HiCDataHumanIMR90")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("HiCDataHumanIMR90")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HiCDataHumanIMR90")
HiC Data Human Fibroblast Dixon et al. 2012 PDF R Script
Reference Manual PDF

Details

biocViews ExperimentData, GEO, Genome, Homo_sapiens_Data
Version 1.21.0
License GPL-3
Depends R (>= 3.5.0)
Imports
Linking To
Suggests HiTC
System Requirements
Enhances
URL
See More
Depends On Me
Imports Me
Suggests Me HiTC
Links To Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package HiCDataHumanIMR90_1.21.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/HiCDataHumanIMR90
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/HiCDataHumanIMR90
Package Short Url https://bioconductor.org/packages/HiCDataHumanIMR90/
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