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PCHiCdata

This is the development version of PCHiCdata; for the stable release version, see PCHiCdata.

Promoter Capture Hi-C data

Bioconductor version: Development (3.18)

Subsets of Promoter Capture Hi-C data conveniently packaged for Chicago users. Data includes interactions detected for chromosomes 20 and 21 in GM12878 cells and for chromosomes 18 and 19 in mESC.

Author: Paula Freire-Pritchett, Jonathan Cairns, Steven Wingett, Mikhail Spivakov

Maintainer: Mikhail Spivakov <mikhail.spivakov at lms.mrc.ac.uk>

Citation (from within R, enter citation("PCHiCdata")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("PCHiCdata")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PCHiCdata")
PCHiCdata Vignette HTML R Script
Reference Manual PDF

Details

biocViews ExperimentData, Homo_sapiens_Data, Mus_musculus_Data, SequencingData, StemCell
Version 1.29.0
License Artistic-2.0
Depends R (>= 3.2), Chicago
Imports
Linking To
Suggests testthat, BiocStyle, knitr
System Requirements
Enhances
URL
See More
Depends On Me
Imports Me
Suggests Me Chicago
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package PCHiCdata_1.29.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/PCHiCdata
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/PCHiCdata
Package Short Url https://bioconductor.org/packages/PCHiCdata/
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