RLHub

This is the development version of RLHub; for the stable release version, see RLHub.

An ExperimentHub package for accessing processed RLSuite data sets

Bioconductor version: Development (3.18)

| RLHub provides a convenient interface to the processed data provided within RLSuite, a tool-chain for analyzing R-loop-mapping data sets. The primary purpose of RLHub is to serve the processed data sets required by the RLSeq R package and the RLBase web service. Additionally, RLHub provides a stand-alone R interface to these data, benefiting users who are addressing questions related to R-loop regions (RL-Regions), R-loop-binding proteins (RLBPs), R-loop co-localizing factors, and the differences between R-loop-mapping methods. The full data-generating protocol is found here: https://github.com/Bishop-Laboratory/RLBase-data.

Author: Henry Miller [aut, cre, cph] , Alexander Bishop [ths, cph]

Maintainer: Henry Miller <millerh1 at uthscsa.edu>

Citation (from within R, enter citation("RLHub")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("RLHub")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation


Reference Manual	PDF

Details

biocViews	ChIPSeqData, DNASeqData, ENCODE, ExperimentData, ExperimentHub, ExpressionData, GEO, Genome, PackageTypeData, RNASeqData, ReproducibleResearch, SequencingData
Version	1.7.0
License	MIT + file LICENSE
Depends
Imports	AnnotationHub, ExperimentHub, utils
Linking To
Suggests	knitr, DT, rmarkdown, testthat, BiocStyle
System Requirements
Enhances
URL	https://github.com/Bishop-Laboratory/RLHub https://bishop-laboratory.github.io/RLHub/
Bug Reports	https://github.com/Bishop-Laboratory/RLHub/issues

Depends On Me
Imports Me	RLSeq
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/RLHub
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/RLHub
Package Short Url	https://bioconductor.org/packages/RLHub/
Package Downloads Report	Download Stats