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TENxBUSData

This is the development version of TENxBUSData; for the stable release version, see TENxBUSData.

Single cell dataset from 10x in BUS format

Bioconductor version: Development (3.18)

Download Barcode, UMI, and Set (BUS) format of 10x datasets from within R. This package accompanies the package BUSpaRse, which can load BUS format into R as a sparse matrix, and which has utility functions related to using the C++ command line package bustools.

Author: Lambda Moses [aut, cre]

Maintainer: Lambda Moses <dlu2 at caltech.edu>

Citation (from within R, enter citation("TENxBUSData")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("TENxBUSData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TENxBUSData")
Downloading BUS data HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews ExperimentData, ExperimentHub, ExpressionData, SequencingData, SingleCellData
Version 1.15.0
License BSD_2_clause + file LICENSE
Depends
Imports ExperimentHub, AnnotationHub, utils, BiocGenerics
Linking To
Suggests knitr, rmarkdown, BiocStyle
System Requirements
Enhances
URL https://github.com/BUStools/TENxBUSData
Bug Reports https://github.com/BUStools/TENxBUSData/issues
See More
Depends On Me
Imports Me
Suggests Me BUSpaRse
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TENxBUSData_1.15.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/TENxBUSData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TENxBUSData
Package Short Url https://bioconductor.org/packages/TENxBUSData/
Package Downloads Report Download Stats