This site is a development preview. As such the content and styling may not be final and is subject to change before going into production. To see more information about the redesign click here.

TimerQuant

This is the development version of TimerQuant; for the stable release version, see TimerQuant.

Timer Quantification

Bioconductor version: Development (3.18)

Supplementary Data package for tandem timer methods paper by Barry et al. (2015) including TimerQuant shiny applications.

Author: Joseph Barry

Maintainer: Joseph Barry <joseph.barry at embl.de>

Citation (from within R, enter citation("TimerQuant")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("TimerQuant")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TimerQuant")
Supplementary Methods - automatic generation of paper figures PDF R Script
Supplementary Methods - mathematical derivations PDF R Script
Reference Manual PDF

Details

biocViews Danio_rerio_Data, ExperimentData, HighThroughputImagingData, Tissue
Version 1.31.0
License Artistic-2.0
Depends shiny
Imports ggplot2, grid, gridExtra, deSolve, dplyr, locfit
Linking To
Suggests BiocStyle, reshape2, knitr, shinyBS
System Requirements
Enhances
URL
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TimerQuant_1.31.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/TimerQuant
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TimerQuant
Package Short Url https://bioconductor.org/packages/TimerQuant/
Package Downloads Report Download Stats