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epimutacionsData

This is the development version of epimutacionsData; for the stable release version, see epimutacionsData.

Data for epimutacions package

Bioconductor version: Development (3.18)

This package includes the data necessary to run functions and examples in epimutacions package. Collection of DNA methylation data. The package contains 2 datasets: (1) Control ( GEO: GSE104812), (GEO: GSE97362) case samples; and (2) reference panel (GEO: GSE127824). It also contains candidate regions to be epimutations in 450k methylation arrays.

Author: Leire Abarrategui [aut, cre], Juan R. Gonzalez [aut], Carlos Ruiz-Arenas [aut], Carles Hernandez-Ferrer [aut]

Maintainer: Leire Abarrategui <abarrategui.leire at gmail.com>

Citation (from within R, enter citation("epimutacionsData")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("epimutacionsData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("epimutacionsData")
data repository for epimutacions package HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews ExperimentData, ExperimentHub, Homo_sapiens_Data, MethylationArrayData, MicroarrayData
Version 1.5.0
License MIT + file LICENSE
Depends R (>= 4.2.0)
Imports
Linking To
Suggests rmarkdown, BiocStyle, knitr, ExperimentHub, minfi
System Requirements
Enhances
URL https://github.com/LeireAbarrategui/epimutacionsData
Bug Reports https://github.com/LeireAbarrategui/epimutacionsData/issues
See More
Depends On Me epimutacions
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package epimutacionsData_1.5.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/epimutacionsData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/epimutacionsData
Package Short Url https://bioconductor.org/packages/epimutacionsData/
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