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ewceData

This is the development version of ewceData; for the stable release version, see ewceData.

The ewceData package provides reference data required for ewce

Bioconductor version: Development (3.18)

This package provides reference data required for ewce. Expression Weighted Celltype Enrichment (EWCE) is used to determine which cell types are enriched within gene lists. The package provides tools for testing enrichments within simple gene lists (such as human disease associated genes) and those resulting from differential expression studies. The package does not depend upon any particular Single Cell Transcriptome dataset and user defined datasets can be loaded in and used in the analyses.

Author: Alan Murphy [cre] , Nathan Skene [aut]

Maintainer: Alan Murphy <alanmurph94 at hotmail.com>

Citation (from within R, enter citation("ewceData")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("ewceData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ewceData")
Data package for Expression Weighted Celltype Enrichment EWCE HTML R Script
Reference Manual PDF

Details

biocViews ExperimentData, ExperimentHub, ExpressionData, Genome, MicroarrayData, Proteome, RNASeqData, SequencingData, SingleCellData
Version 1.9.0
License Artistic-2.0
Depends R (>= 4.1), ExperimentHub
Imports
Linking To
Suggests knitr, BiocStyle, ggplot2, cowplot, rmarkdown, markdown, testthat (>= 3.0.0)
System Requirements
Enhances
URL https://github.com/neurogenomics/ewceData
See More
Depends On Me
Imports Me EWCE
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ewceData_1.9.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/ewceData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ewceData
Package Short Url https://bioconductor.org/packages/ewceData/
Package Downloads Report Download Stats